CDS

Accession Number TCMCG013C12628
gbkey CDS
Protein Id XP_006474277.1
Location join(2337460..2337792,2338354..2338445,2339468..2339553,2339657..2339793,2340237..2340311,2340401..2340492,2340865..2340936,2341189..2341268,2341390..2341427,2341516..2341522,2341678..2341881,2342511..2342586,2343047..2343171,2343265..2343299,2343395..2343453,2343999..2344082,2344454..2344549,2344658..2344706,2344840..2344927,2345057..2345260,2347384..2347509,2347607..2347706,2347820..2347925,2348150..2348280,2348421..2348582,2348798..2348953,2349235..2349946)
Gene LOC102608121
GeneID 102608121
Organism Citrus sinensis

Protein

Length 1174aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA225998
db_source XM_006474214.3
Definition DNA ligase 4 isoform X1 [Citrus sinensis]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA ligase
KEGG_TC -
KEGG_Module -
KEGG_Reaction R00381        [VIEW IN KEGG]
KEGG_rclass RC00005        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10777        [VIEW IN KEGG]
EC 6.5.1.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03450        [VIEW IN KEGG]
map03450        [VIEW IN KEGG]
GOs GO:0000726        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003909        [VIEW IN EMBL-EBI]
GO:0003910        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005576        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006266        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006297        [VIEW IN EMBL-EBI]
GO:0006302        [VIEW IN EMBL-EBI]
GO:0006303        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010165        [VIEW IN EMBL-EBI]
GO:0010212        [VIEW IN EMBL-EBI]
GO:0016874        [VIEW IN EMBL-EBI]
GO:0016886        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032807        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048046        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051103        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGACGAAGACAGAAGAGACCGAGGTGATCGTTTTAGTGAGTCTTTTCAACTGGATACAAAAAACCAAACCAGCGGCCAAGAAACGGTCCAAGTTCCGCAAATTTCTCGATACTTACTGTGACTCGGTGGACTACTTTAGTGCATTGCGGCTGATTCTGCCGTCGTTGGACCGGGAAAGAGGCAGCTATGGCCTCAAAGAGTCGGTGCTCGCCAACTGCCTCATCGATGCCCTGGGCATGTCTAAAGACTCCGCTGACGCCGTTCGGCTTATTAATTGGCGCAAGGGAGGCACCGCTCCTAATGCCGGAAATTTCCCAATGGTCGCTGCTGAGGTTCTGCAACGTAGGCAAGGAATGATTTCTGGTGGACTTACAATTAAGGAATTAAATGACTTGCTTGATCGCTTGGCTTCAAGTGAAAACAGGGCTGAGAAGACTTCAGTTCTGTCTACTCTAATTAAGAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATTCTGAAAGATCTAAAGTTGGGAATTAGTGAAAAGAGCATATTCCATGAGTTTCATCCGGATGCTGAGGACCTGTTTAATGTGACATGTGACTTAAAACTGGTTTGTGAGAAGTTAAAGGATCGAAACCAGAGACATAAACGGCAGGACATCGAAGTTGGGAAAGCTGTGCGCCCACAACTAGCTATGAGAATAGGTGATGCACATGCTGCCTGGAGAAAGCTTCATGGGAAAGAAGTGGTCATTGAGTGCAAATTTGATGGTGATCGCATTCAAATTCATAAAAATGGTTCAGAAATACACTACTTCTCAAGGAGCTTTCTTGATCACTCTGAATATGGACATGCGATGTCAAAGATTATTGAGCAAAACGTTTTGGTTGACAGGTGCATACTCGATGGTGAAATGTTGGTCTGGGACACTTCTTTGAATCGATTTGCAGAATTTGGTTCAAATCAGGAAATAGCCAAGGCAGCGAGGGATGGACTTTCAAGTGATCGACAGTTGTGCTATTTTGCATTTGATGTTCTGTATGTGGGAGATACTAGCGTCATTCACCAGAGCTTGAAGGAACGACATGAGCTTCTCCAAAAAGTTGTGAAGCCTTCGAAAGGTCGTTTAGAGACCTTAGTACCTGATCATGGTCTCAATTCTCACGTGAGACCTCAAGGTAAAGAACATGAGATGACTGATATTCCTTTACCATTCAACAAAGGGGAACCTTGCTGGTCACTTGTTGCTCATAATGTGGATGAGGTTGAGAAGTTCTTCAAAGAAACCATTGAGAATAGGGATGAAGGAATTGTATTGAAAGACCTTGGTTCGAAATGGGAGCCAGGTGATCGAAGTGGAAAGTGGTTGAAGCTGAAGCCTGAGTACATCCGTGCTGGTTCAGACTTGGATGTACTAATAATTGGAGGATATTATGGCTCCGGTCGTCGTGGAGGGGAGGTTGCTCAGTTCTTGGTTGCCCTGGCAGAGCGTCCAGCTCCAGATACATATCCTAGAAGATTTATCTCCTTTTGCCGAGTGGGTACTGGTCTCTCTGATGAGGAACTAGATGCTGTTGTAACTAAGTTGAAGCCTTATTTTAGGAAATATGAATATCCAAAAAGGGCACCTCCAAGTTTTTATCAAGTTACAAATAATTCAAAGGAGAGACCTGATGTTTGGATTGAGAGCCCTGAGAAATCAATAATACTTTCTATTACCAGTGATATTCGAACCATAAGGTCTGAGGTTTTTTCTGCACCATACAGCCTGAGATTTCCACGCATTGATAGAGTGAGATATGACAAGCCTTGGCATGATTGCCTTGACGTGCAGTCATTTGTAGAACTTGTGCATTCAAGTAATGGCACCACTCAGAAGGGGAAAGAATATGGAGGCTTGCAAGATGATAAGCCAAAACAATTCAGATCCTCCAGAAAGGGAGAGAAAAAGAATGTGTCTATTGTTCCTTCTCATTTTCTTCAGACTGATGTTTCTGACATAAAGGGGGAAACCTCAATATTTTCAGATATGGTGTTTTATTTTGTTAATGTACCTCCAGCCTATTCCCTTGACTCCTTGCACAAAATGGTTGTTGAGAATGGAGGAACATTTTCAATGAATTTGAATAACTCAGTTACCCACTGTGTTGCAGCTGATAACAAAGGGCTTAAATATGAGGCAGCAAAACGTCGTGGAGATGTTATTCATTACTCTTGGGTCTTGGATTGTTGTTCACAAAAGAAGCTTCTCCAATTGCAGCCAAAGTACTACCTTCATCTATCTGACTCTTCGAAGAAAAAGCTACAAGAAGAAGTTGATGAATTTTCTGACCTGTACTTTTGGGATCTTGACCTTGCAGATATCAAACAGCTCTTAAGCAATGTTGATAGATCAGAAGACCCCAAAACTATTGATTATTATAAGAAGAAGTACTGTCCACAGGACAAGTGGTCTTGCTTTCATGGCTGCTGCATTTACTTCTACCATTCAACAGAGCCTTTGAGTCCTGATTGGGAAGTTATATTGGGGCTTGCCCTGAGGAGATTGAAGCTTGAAATTTCCTTTCATGGCGGTAAAGTCTGCAACAATCTTGCAAATGCTACCCACGTGGTGGTCTTGTCAGTACTGGGATATGATGTGAACTTTAATTCTCTTACAGAAAGTTTCACTGCCAGAGAGAAACATCTTTTATGGAACAAGAAGTTGCATGTTGTTAGATCCCAGTGGTTGGAAGATTGCTTGGCGAAGGAGCAAAAGTCGGAAGAATACGAATACAGCTTGAAGCCCACTGGCATGCAAGAGTCGTACCTTGAATTGTGCGAAGAAGACCTGGATATGGAAGAACCCTCATCTACATTGGAAACTTCAGACAAACAGAATGTGTCATCTTTCCCGGACGGTGATGGTAAGCAGAGAGGAACCAGAGGTGTTTCCCCTGCCTCACCAAAGAGAGAAGGCAAAAGGAAAAGAGGAAGACCTGCTGGTGGAAGCGCAAAGAAAAGAAAATCAACTGTCAACCTAGCTCGGAGAAAAAGGCCACATGTTAGAAATAAACCTTCAAAGATATACCAAAATGAATCTGATGAAAGTAATGCTTCTGATGAAACAGAAAAAAAGGAAGAGATCAATAGGGAAGAGAATCATGAAGATCGTGAAATGGATGATGAGGAAAATCTGGAAACTCGACAGACTAATGTAGTGGAAGATTTAGAATCATTAGACCGAGGCAAGGCACTTCAACAAGAGGTTGTCAAAGATTTTGGGAAAGAAAAACAGACTGTTAGAGCTCCTGATATTGAAATGAGAGAAAGGTATCACAGCAAAGACAGTGAGACAACTGATAAGCAGCAAGTTGATGCAGTTCAAGCCATGTTACTGGACATGATTCCAAGCCTTGGAATGAAGAATGAAAAAACTACAAATCCGATTCCGAAAGAAGAGTCATCATCTGCAGAACCAAGTGCAGAGCCTACAAAGAAAAAGAAAGTCAGCTACAAGGATATTGCCAGCAAACTACTCAAGGATTGGTAG
Protein:  
MTKTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSYGLKESVLANCLIDALGMSKDSADAVRLINWRKGGTAPNAGNFPMVAAEVLQRRQGMISGGLTIKELNDLLDRLASSENRAEKTSVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGKEHEMTDIPLPFNKGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVILGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGMQESYLELCEEDLDMEEPSSTLETSDKQNVSSFPDGDGKQRGTRGVSPASPKREGKRKRGRPAGGSAKKRKSTVNLARRKRPHVRNKPSKIYQNESDESNASDETEKKEEINREENHEDREMDDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKEKQTVRAPDIEMRERYHSKDSETTDKQQVDAVQAMLLDMIPSLGMKNEKTTNPIPKEESSSAEPSAEPTKKKKVSYKDIASKLLKDW